Detailed information of SNP:
|
SNP ID:
sf0217406101(Gbrowse)
Chromosome: chr02 Position: 17406101 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1147 | 78.99% | 21.01% |
| All Indica | 533 | 57.79% | 42.21% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 276 | 51.81% | 48.19% |
| Indica II | 132 | 75.76% | 24.24% |
| Indica Intermediate | 125 | 52.00% | 48.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217406101 | G->A | INTERGENIC | None |