Detailed information of SNP:
|
SNP ID:
sf0217424205(Gbrowse)
Chromosome: chr02 Position: 17424205 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 56.50% | 43.50% |
| All Indica | 796 | 31.41% | 68.59% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 373 | 39.14% | 60.86% |
| Indica II | 213 | 19.25% | 80.75% |
| Indica Intermediate | 210 | 30.00% | 70.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217424205 | G->A | LOC_Os02g29340(LOC_Os02g29340.1) | Synonymous |