Detailed information of SNP:
|
SNP ID:
sf0217431539(Gbrowse)
Chromosome: chr02 Position: 17431539 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 83.40% | 16.60% |
| All Indica | 796 | 79.40% | 20.60% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 373 | 73.19% | 26.81% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217431539 | C->T | INTERGENIC | None |