Detailed information of SNP:
|
SNP ID:
sf0217453266(Gbrowse)
Chromosome: chr02 Position: 17453266 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 77.93% | 22.07% |
| All Indica | 798 | 65.29% | 34.71% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 61.87% | 38.13% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 210 | 56.19% | 43.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217453266 | C->T | INTERGENIC | None |