Detailed information of SNP:
|
SNP ID:
sf0217470587(Gbrowse)
Chromosome: chr02 Position: 17470587 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 96.64% | 3.36% |
| All Indica | 776 | 97.16% | 2.84% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 54 | 66.67% | 33.33% |
| Indica I | 365 | 98.90% | 1.10% |
| Indica II | 209 | 94.74% | 5.26% |
| Indica Intermediate | 202 | 96.53% | 3.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 7 | 42.86% | 57.14% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217470587 | G->A | INTERGENIC | None |