Detailed information of SNP:
|
SNP ID:
sf0217488810(Gbrowse)
Chromosome: chr02 Position: 17488810 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 77.29% | 22.71% |
| All Indica | 798 | 65.16% | 34.84% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 63.10% | 36.90% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 54.03% | 45.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217488810 | G->A | LOC_Os02g29464(LOC_Os02g29464.1) | INTRON |