Detailed information of SNP:
|
SNP ID:
sf0217491212(Gbrowse)
Chromosome: chr02 Position: 17491212 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.86% | 39.14% |
| All Indica | 799 | 38.05% | 61.95% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 40.00% | 60.00% |
| Indica II | 213 | 25.35% | 74.65% |
| Indica Intermediate | 211 | 47.39% | 52.61% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217491212 | G->A | LOC_Os02g29464(LOC_Os02g29464.1) | INTRON |