Detailed information of SNP:
|
SNP ID:
sf0217512112(Gbrowse)
Chromosome: chr02 Position: 17512112 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 78.79% | 21.21% |
| All Indica | 799 | 70.71% | 29.29% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 69.60% | 30.40% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217512112 | T->C | INTERGENIC | None |