Detailed information of SNP:
|
SNP ID:
sf0217513536(Gbrowse)
Chromosome: chr02 Position: 17513536 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 83.43% | 16.57% |
| All Indica | 792 | 76.64% | 23.36% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 372 | 72.31% | 27.69% |
| Indica II | 212 | 68.87% | 31.13% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217513536 | C->T | LOC_Os02g29490(LOC_Os02g29490.1) | Non-Synonymous SNP |