Detailed information of SNP:
|
SNP ID:
sf0217518230(Gbrowse)
Chromosome: chr02 Position: 17518230 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 79.53% | 20.47% |
| All Indica | 797 | 71.14% | 28.86% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 374 | 62.30% | 37.70% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217518230 | G->A | INTERGENIC | None |