Detailed information of SNP:
|
SNP ID:
sf0217521383(Gbrowse)
Chromosome: chr02 Position: 17521383 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 64.62% | 35.38% |
| All Indica | 799 | 50.56% | 49.44% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 36.00% | 64.00% |
| Indica II | 213 | 59.15% | 40.85% |
| Indica Intermediate | 211 | 67.77% | 32.23% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217521383 | G->C | INTERGENIC | None |