Detailed information of SNP:
|
SNP ID:
sf0217533834(Gbrowse)
Chromosome: chr02 Position: 17533834 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1233 | 57.66% | 42.34% |
| All Indica | 657 | 97.41% | 2.59% |
| All Japonica | 496 | 1.41% | 98.59% |
| Aus | 33 | 96.97% | 3.03% |
| Indica I | 290 | 100.00% | 0.00% |
| Indica II | 164 | 90.85% | 9.15% |
| Indica Intermediate | 203 | 99.01% | 0.99% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 33 | 57.58% | 42.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217533834 | T->G | INTERGENIC | None |