Detailed information of SNP:
|
SNP ID:
sf0217534200(Gbrowse)
Chromosome: chr02 Position: 17534200 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 79.36% | 20.64% |
| All Indica | 795 | 68.55% | 31.45% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 372 | 60.75% | 39.25% |
| Indica II | 212 | 83.49% | 16.51% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217534200 | C->T | INTERGENIC | None |