Detailed information of SNP:
|
SNP ID:
sf0217535916(Gbrowse)
Chromosome: chr02 Position: 17535916 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 62.27% | 37.73% |
| All Indica | 773 | 97.93% | 2.07% |
| All Japonica | 495 | 1.01% | 98.99% |
| Aus | 57 | 98.25% | 1.75% |
| Indica I | 366 | 100.00% | 0.00% |
| Indica II | 206 | 93.69% | 6.31% |
| Indica Intermediate | 201 | 98.51% | 1.49% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217535916 | G->C | LOC_Os02g29520(LOC_Os02g29520.1) | Non-Synonymous SNP |