Detailed information of SNP:
|
SNP ID:
sf0217536139(Gbrowse)
Chromosome: chr02 Position: 17536139 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 52.89% | 47.11% |
| All Indica | 798 | 22.56% | 77.44% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 26.74% | 73.26% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 211 | 5.21% | 94.79% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217536139 | G->A | LOC_Os02g29520(LOC_Os02g29520.1) | Non-Synonymous SNP |