Detailed information of SNP:
|
SNP ID:
sf0217540949(Gbrowse)
Chromosome: chr02 Position: 17540949 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 98.34% | 1.66% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 466 | 95.49% | 4.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 312 | 94.55% | 5.45% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217540949 | T->A | INTERGENIC | None |