Detailed information of SNP:
|
SNP ID:
sf0217550064(Gbrowse)
Chromosome: chr02 Position: 17550064 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 64.76% | 35.24% |
| All Indica | 794 | 41.18% | 58.82% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 372 | 41.40% | 58.60% |
| Indica II | 211 | 49.29% | 50.71% |
| Indica Intermediate | 211 | 32.70% | 67.30% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217550064 | G->A | INTERGENIC | None |