Detailed information of SNP:
|
SNP ID:
sf0217561976(Gbrowse)
Chromosome: chr02 Position: 17561976 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 74.49% | 25.51% |
| All Indica | 799 | 57.45% | 42.55% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 64.27% | 35.73% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 211 | 50.71% | 49.29% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217561976 | A->C | INTERGENIC | None |