Detailed information of SNP:
|
SNP ID:
sf0217576840(Gbrowse)
Chromosome: chr02 Position: 17576840 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 80.24% | 19.76% |
| All Indica | 790 | 73.42% | 26.58% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 60 | 30.00% | 70.00% |
| Indica I | 366 | 74.04% | 25.96% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217576840 | A->T | INTERGENIC | None |