Detailed information of SNP:
|
SNP ID:
sf0217588607(Gbrowse)
Chromosome: chr02 Position: 17588607 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 81.65% | 18.35% |
| All Indica | 789 | 72.37% | 27.63% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 369 | 62.87% | 37.13% |
| Indica II | 211 | 87.20% | 12.80% |
| Indica Intermediate | 209 | 74.16% | 25.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217588607 | G->A | INTERGENIC | None |