Detailed information of SNP:
|
SNP ID:
sf0217589560(Gbrowse)
Chromosome: chr02 Position: 17589560 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 59.15% | 40.85% |
| All Indica | 796 | 34.42% | 65.58% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 43.94% | 56.06% |
| Indica I | 372 | 44.09% | 55.91% |
| Indica II | 213 | 21.13% | 78.87% |
| Indica Intermediate | 211 | 30.81% | 69.19% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217589560 | G->A | INTERGENIC | None |