Detailed information of SNP:
|
SNP ID:
sf0217599763(Gbrowse)
Chromosome: chr02 Position: 17599763 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 56.53% | 43.47% |
| All Indica | 797 | 31.74% | 68.26% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 373 | 39.95% | 60.05% |
| Indica II | 213 | 19.72% | 80.28% |
| Indica Intermediate | 211 | 29.38% | 70.62% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217599763 | C->T | INTERGENIC | None |