Detailed information of SNP:
|
SNP ID:
sf0217610030(Gbrowse)
Chromosome: chr02 Position: 17610030 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1312 | 65.70% | 34.30% |
| All Indica | 707 | 41.16% | 58.84% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 55 | 65.45% | 34.55% |
| Indica I | 321 | 25.86% | 74.14% |
| Indica II | 196 | 62.24% | 37.76% |
| Indica Intermediate | 190 | 45.26% | 54.74% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217610030 | G->C | LOC_Os02g29610(LOC_Os02g29610.1) | INTRON |