Detailed information of SNP:
|
SNP ID:
sf0217610655(Gbrowse)
Chromosome: chr02 Position: 17610655 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 95.88% | 4.12% |
| All Indica | 764 | 93.19% | 6.81% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 349 | 93.70% | 6.30% |
| Indica II | 207 | 92.75% | 7.25% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217610655 | C->A | INTERGENIC | None |