Detailed information of SNP:
|
SNP ID:
sf0217610961(Gbrowse)
Chromosome: chr02 Position: 17610961 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1347 | 63.92% | 36.08% |
| All Indica | 737 | 37.45% | 62.55% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 59 | 72.88% | 27.12% |
| Indica I | 344 | 23.55% | 76.45% |
| Indica II | 193 | 62.18% | 37.82% |
| Indica Intermediate | 200 | 37.50% | 62.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217610961 | T->G | INTERGENIC | None |