Detailed information of SNP:



SNP ID: sf0217625976(Gbrowse)

Chromosome: chr02

Position: 17625976 		Major allele: C

Minor allele: A

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1317 80.79% 19.21%
All Indica715 66.85% 33.15%
All Japonica497 99.60% 0.40%
Aus53 83.02% 16.98%
Indica I335 76.42% 23.58%
Indica II196 59.18% 40.82%
Indica Intermediate184 57.61% 42.39%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate38 86.84% 13.16%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0217625976 C->A LOC_Os02g29640(LOC_Os02g29640.1) INTRON