Detailed information of SNP:
|
SNP ID:
sf0217644014(Gbrowse)
Chromosome: chr02 Position: 17644014 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 53.61% | 46.39% |
| All Indica | 777 | 86.10% | 13.90% |
| All Japonica | 495 | 0.61% | 99.39% |
| Aus | 63 | 77.78% | 22.22% |
| Indica I | 363 | 88.43% | 11.57% |
| Indica II | 206 | 81.55% | 18.45% |
| Indica Intermediate | 208 | 86.54% | 13.46% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217644014 | C->T | INTERGENIC | None |