Detailed information of SNP:
|
SNP ID:
sf0217646181(Gbrowse)
Chromosome: chr02 Position: 17646181 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 96.79% | 3.21% |
| All Indica | 789 | 96.70% | 3.30% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 59 | 67.80% | 32.20% |
| Indica I | 371 | 98.92% | 1.08% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 206 | 91.75% | 8.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217646181 | C->T | LOC_Os02g29650(LOC_Os02g29650.1) | SNPs that introduce stop codons |