Detailed information of SNP:
|
SNP ID:
sf0217647582(Gbrowse)
Chromosome: chr02 Position: 17647582 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 61.39% | 38.61% |
| All Indica | 793 | 96.09% | 3.91% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 210 | 89.05% | 10.95% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217647582 | A->G | INTERGENIC | None |