Detailed information of SNP:
|
SNP ID:
sf0217651122(Gbrowse)
Chromosome: chr02 Position: 17651122 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 59.79% | 40.21% |
| All Indica | 792 | 94.07% | 5.93% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 210 | 83.33% | 16.67% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217651122 | T->C | INTERGENIC | None |