Detailed information of SNP:
|
SNP ID:
sf0217652809(Gbrowse)
Chromosome: chr02 Position: 17652809 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 54.78% | 45.22% |
| All Indica | 792 | 86.62% | 13.38% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 90.32% | 9.68% |
| Indica II | 211 | 75.36% | 24.64% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217652809 | A->G | LOC_Os02g29660(LOC_Os02g29660.1) | INTRON |