Detailed information of SNP:
|
SNP ID:
sf0217664274(Gbrowse)
Chromosome: chr02 Position: 17664274 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 91.11% | 8.89% |
| All Indica | 798 | 97.99% | 2.01% |
| All Japonica | 485 | 78.56% | 21.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 88 | 17.05% | 82.95% |
| Japonica Intermediate | 62 | 58.06% | 41.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217664274 | T->C | INTERGENIC | None |