Detailed information of SNP:
|
SNP ID:
sf0217666700(Gbrowse)
Chromosome: chr02 Position: 17666700 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 56.51% | 43.49% |
| All Indica | 777 | 88.80% | 11.20% |
| All Japonica | 493 | 2.03% | 97.97% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 360 | 86.67% | 13.33% |
| Indica II | 210 | 89.05% | 10.95% |
| Indica Intermediate | 207 | 92.27% | 7.73% |
| Temperate Japonica | 332 | 1.51% | 98.49% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217666700 | G->C | LOC_Os02g29700(LOC_Os02g29700.1) | Synonymous |