Detailed information of SNP:
|
SNP ID:
sf0217671373(Gbrowse)
Chromosome: chr02 Position: 17671373 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 58.11% | 41.89% |
| All Indica | 788 | 30.84% | 69.16% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 367 | 36.78% | 63.22% |
| Indica II | 210 | 30.95% | 69.05% |
| Indica Intermediate | 211 | 20.38% | 79.62% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217671373 | G->A | LOC_Os02g29720(LOC_Os02g29720.1) | Non-Synonymous SNP |