Detailed information of SNP:
|
SNP ID:
sf0217671386(Gbrowse)
Chromosome: chr02 Position: 17671386 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 56.94% | 43.06% |
| All Indica | 783 | 28.99% | 71.01% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 367 | 35.15% | 64.85% |
| Indica II | 208 | 28.85% | 71.15% |
| Indica Intermediate | 208 | 18.27% | 81.73% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217671386 | T->G | LOC_Os02g29720(LOC_Os02g29720.1) | Non-Synonymous SNP |