Detailed information of SNP:
|
SNP ID:
sf0217671494(Gbrowse)
Chromosome: chr02 Position: 17671494 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 58.08% | 41.92% |
| All Indica | 785 | 30.45% | 69.55% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 64 | 67.19% | 32.81% |
| Indica I | 371 | 36.66% | 63.34% |
| Indica II | 207 | 29.95% | 70.05% |
| Indica Intermediate | 207 | 19.81% | 80.19% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217671494 | A->G | LOC_Os02g29720(LOC_Os02g29720.1) | Synonymous |