Detailed information of SNP:
|
SNP ID:
sf0217671735(Gbrowse)
Chromosome: chr02 Position: 17671735 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 58.21% | 41.79% |
| All Indica | 785 | 30.96% | 69.04% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 65 | 64.62% | 35.38% |
| Indica I | 365 | 36.16% | 63.84% |
| Indica II | 209 | 30.62% | 69.38% |
| Indica Intermediate | 211 | 22.27% | 77.73% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217671735 | G->C | LOC_Os02g29720(LOC_Os02g29720.1) | INTRON |