Detailed information of SNP:
|
SNP ID:
sf0217672364(Gbrowse)
Chromosome: chr02 Position: 17672364 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 50.18% | 49.82% |
| All Indica | 787 | 19.95% | 80.05% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 64 | 34.38% | 65.62% |
| Indica I | 368 | 21.20% | 78.80% |
| Indica II | 212 | 23.11% | 76.89% |
| Indica Intermediate | 207 | 14.49% | 85.51% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217672364 | A->T | INTERGENIC | None |