Detailed information of SNP:
|
SNP ID:
sf0217674079(Gbrowse)
Chromosome: chr02 Position: 17674079 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1348 | 68.62% | 31.38% |
| All Indica | 737 | 47.35% | 52.65% |
| All Japonica | 494 | 99.19% | 0.81% |
| Aus | 63 | 61.90% | 38.10% |
| Indica I | 337 | 49.26% | 50.74% |
| Indica II | 204 | 48.04% | 51.96% |
| Indica Intermediate | 196 | 43.37% | 56.63% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217674079 | G->A | LOC_Os02g29730(LOC_Os02g29730.1) | INTRON |