Detailed information of SNP:
|
SNP ID:
sf0217674103(Gbrowse)
Chromosome: chr02 Position: 17674103 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 97.21% | 2.79% |
| All Indica | 782 | 97.06% | 2.94% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 63 | 79.37% | 20.63% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 205 | 94.15% | 5.85% |
| Indica Intermediate | 205 | 97.07% | 2.93% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217674103 | G->A | LOC_Os02g29730(LOC_Os02g29730.1) | INTRON |