Detailed information of SNP:
|
SNP ID:
sf0217674105(Gbrowse)
Chromosome: chr02 Position: 17674105 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1314 | 86.15% | 13.85% |
| All Indica | 700 | 74.86% | 25.14% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 334 | 70.36% | 29.64% |
| Indica II | 187 | 83.42% | 16.58% |
| Indica Intermediate | 179 | 74.30% | 25.70% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217674105 | G->A | LOC_Os02g29730(LOC_Os02g29730.1) | INTRON |