Detailed information of SNP:
|
SNP ID:
sf0217689017(Gbrowse)
Chromosome: chr02 Position: 17689017 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1313 | 97.03% | 2.97% |
| All Indica | 742 | 99.73% | 0.27% |
| All Japonica | 467 | 92.51% | 7.49% |
| Aus | 53 | 100.00% | 0.00% |
| Indica I | 350 | 100.00% | 0.00% |
| Indica II | 197 | 100.00% | 0.00% |
| Indica Intermediate | 195 | 98.97% | 1.03% |
| Temperate Japonica | 310 | 89.68% | 10.32% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217689017 | G->A | LOC_Os02g29750(LOC_Os02g29750.1) | INTRON |