Detailed information of SNP:
|
SNP ID:
sf0217703664(Gbrowse)
Chromosome: chr02 Position: 17703664 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 61.00% | 39.00% |
| All Indica | 786 | 33.84% | 66.16% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 370 | 33.51% | 66.49% |
| Indica II | 207 | 40.58% | 59.42% |
| Indica Intermediate | 209 | 27.75% | 72.25% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217703664 | C->G | LOC_Os02g29760(LOC_Os02g29760.1) | Non-Synonymous SNP |