Detailed information of SNP:



SNP ID: sf0217707391(Gbrowse)

Chromosome: chr02

Position: 17707391
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1398 54.65% 45.35%
All Indica781 25.74% 74.26%
All Japonica497 99.80% 0.20%
Aus66 42.42% 57.58%
Indica I366 26.23% 73.77%
Indica II208 32.69% 67.31%
Indica Intermediate207 17.87% 82.13%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 85.71% 14.29%
Intermediate40 67.50% 32.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0217707391 T->C LOC_Os02g29760(LOC_Os02g29760.1) Synonymous