Detailed information of SNP:
SNP ID:
sf0217707391(Gbrowse)
Chromosome: chr02 Position: 17707391 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1398 | 54.65% | 45.35% |
All Indica | 781 | 25.74% | 74.26% |
All Japonica | 497 | 99.80% | 0.20% |
Aus | 66 | 42.42% | 57.58% |
Indica I | 366 | 26.23% | 73.77% |
Indica II | 208 | 32.69% | 67.31% |
Indica Intermediate | 207 | 17.87% | 82.13% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 85.71% | 14.29% |
Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0217707391 | T->C | LOC_Os02g29760(LOC_Os02g29760.1) | Synonymous |