Detailed information of SNP:
|
SNP ID:
sf0217712949(Gbrowse)
Chromosome: chr02 Position: 17712949 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 90.21% | 9.79% |
| All Indica | 782 | 82.86% | 17.14% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 84.15% | 15.85% |
| Indica II | 209 | 78.95% | 21.05% |
| Indica Intermediate | 207 | 84.54% | 15.46% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217712949 | G->A | LOC_Os02g29774(LOC_Os02g29774.2) | Non-Synonymous SNP |
| sf0217712949 | G->A | LOC_Os02g29774(LOC_Os02g29774.1) | Non-Synonymous SNP |