Detailed information of SNP:
SNP ID:
sf0217722176(Gbrowse)
Chromosome: chr02 Position: 17722176 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1368 | 52.41% | 47.59% |
All Indica | 758 | 84.43% | 15.57% |
All Japonica | 495 | 1.41% | 98.59% |
Aus | 62 | 62.90% | 37.10% |
Indica I | 354 | 84.18% | 15.82% |
Indica II | 205 | 80.49% | 19.51% |
Indica Intermediate | 199 | 88.94% | 11.06% |
Temperate Japonica | 334 | 0.90% | 99.10% |
Tropical Japonica | 93 | 1.08% | 98.92% |
Japonica Intermediate | 68 | 4.41% | 95.59% |
Group VI/Aromatic | 12 | 66.67% | 33.33% |
Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0217722176 | A->G | INTERGENIC | None |