Detailed information of SNP:



SNP ID: sf0217722176(Gbrowse)

Chromosome: chr02

Position: 17722176
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1368 52.41% 47.59%
All Indica758 84.43% 15.57%
All Japonica495 1.41% 98.59%
Aus62 62.90% 37.10%
Indica I354 84.18% 15.82%
Indica II205 80.49% 19.51%
Indica Intermediate199 88.94% 11.06%
Temperate Japonica334 0.90% 99.10%
Tropical Japonica93 1.08% 98.92%
Japonica Intermediate68 4.41% 95.59%
Group VI/Aromatic12 66.67% 33.33%
Intermediate41 56.10% 43.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0217722176 A->G INTERGENIC None