Detailed information of SNP:
|
SNP ID:
sf0217731498(Gbrowse)
Chromosome: chr02 Position: 17731498 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 57.95% | 42.05% |
| All Indica | 789 | 30.29% | 69.71% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 371 | 34.50% | 65.50% |
| Indica II | 210 | 32.38% | 67.62% |
| Indica Intermediate | 208 | 20.67% | 79.33% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217731498 | A->G | INTERGENIC | None |