Detailed information of SNP:



SNP ID: sf0217731597(Gbrowse)

Chromosome: chr02

Position: 17731597
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1407 57.50% 42.50%
All Indica789 30.04% 69.96%
All Japonica497 98.99% 1.01%
Aus66 62.12% 37.88%
Indica I371 33.96% 66.04%
Indica II210 32.38% 67.62%
Indica Intermediate208 20.67% 79.33%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 60.98% 39.02%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0217731597 G->A INTERGENIC None