Detailed information of SNP:
|
SNP ID:
sf0217731736(Gbrowse)
Chromosome: chr02 Position: 17731736 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 56.83% | 43.17% |
| All Indica | 788 | 28.81% | 71.19% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 368 | 32.34% | 67.66% |
| Indica II | 212 | 31.60% | 68.40% |
| Indica Intermediate | 208 | 19.71% | 80.29% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217731736 | T->C | INTERGENIC | None |