Detailed information of SNP:
|
SNP ID:
sf0217731864(Gbrowse)
Chromosome: chr02 Position: 17731864 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 57.09% | 42.91% |
| All Indica | 791 | 29.08% | 70.92% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 372 | 32.80% | 67.20% |
| Indica II | 210 | 31.43% | 68.57% |
| Indica Intermediate | 209 | 20.10% | 79.90% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217731864 | G->A | INTERGENIC | None |